Input Requirements
To successfully run easyPARM, the following input files are required:
1. Hessian Matrix Files
The Hessian matrix is essential for force field parameter derivation. It can be provided in one of the following formats:
- Checkpoint File (
.chk): Contains the Hessian matrix from a Gaussian frequency calculation. - Formatted Checkpoint File (
.fchk): Similar to.chk, but in a human-readable format. -
Gaussian Output File (
.log): Contains the Hessian matrix from a single-point frequency calculation. Ensure the input file includes the keyword:iop(7/33=1) - Orca Output File (
.hess): Stores the Hessian matrix from a single-point frequency calculation performed in Orca. - GAMESS Output File (
.dat): Stores the Hessian matrix from a single-point frequency calculation performed in GAMESS.
2. Optimized Molecular Structure
- XYZ Format (
.xyz): This file contains the optimized molecular geometry of the system.
3. Charge Output Files
Charge output files contain electrostatic potential (ESP) charge distributions. Supported formats include:
- Gaussian Charge Output
- RESP Charges (
.log)
- RESP Charges (
- Orca Charge Output
- CHELPG Charges (
.out) - RESP Charges (
.vpot)
- CHELPG Charges (
- GAMESS Charge Output
- RESP Charges (
.dat) - GAMESS Charges (
.log)
- RESP Charges (
These input files ensure smooth operation of easyPARM and accurate force field parameter derivation.